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Top 8 contigs open source projects

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

✭ 52

python Nextflow shell Common Workflow Language bioinformatics ngs microbiology bacteria wgs contigs plasmids

De novo genome assembly and multisample variant calling

✭ 105

c Makefile perl python r shell genomics variant-calling kmer cortex genome-analysis genome-assembly de-bruijn-graphs genome-graph contigs

GraphBin: Refined binning of metagenomic contigs using assembly graphs

✭ 35

python metagenomics binning assembly-graph label-propagation contigs

Scalable long read self-correction and assembly polishing with multiple sequence alignment

✭ 47

C++shell Makefile Dockerfile ngs consensus correction long msa reads contigs long-reads multiple-sequence-alignment polishing self-correction

An efficient index for the colored, compacted, de Bruijn graph

✭ 94

c C++CMake shell python Jupyter Notebook genome hash index debruijn dbg contigs debruijn-graph

Software for prediction of plasmid sequences in metagenomic assemblies

✭ 74

python r shell perl tensorflow prediction classification fasta plasmid metagenomes contigs metagenome plasmid-sequences metagenome-assembly plasmids plasflow

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

✭ 90

perl python shell bioinformatics pipeline genomics docker-image polymorphic closing fasta scaffolding assembled-contigs genome-assembly paired-end contigs heterozygous mate-pairs

Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

✭ 29

python metagenomics binning contigs assembly-graphs

1-8 of 8 contigs projects