1. ConosR package for the joint analysis of multiple single-cell RNA-seq datasets
2. Pagoda2R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
3. BaysorBayesian Segmentation of Spatial Transcriptomics Data
4. dropEstPipeline for initial analysis of droplet-based single-cell RNA-seq data
5. cacoaSingle-cell Case Control Analysis