All Categories → No Category → spatial-transcriptomics

Top 6 spatial-transcriptomics open source projects

Bayesian Segmentation of Spatial Transcriptomics Data

✭ 53

julia segmentation bayesian spatial-transcriptomics

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

✭ 22

HTML analysis human rstats biorxiv brain 10xgenomics spatial-transcriptomics visium dlpfc

spatial transcriptome, single cell

✭ 19

Jupyter Notebook python machine-learning single-cell spatial-transcriptomics

characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

✭ 33

r C++gene-expression rstats spatial-analysis single-cell spatial-transcriptomics cell-cell-communication

Spatial Single Cell Analysis in Python

✭ 235

python shell data-visualization spatial-analysis image-analysis single-cell-genomics single-cell-rna-seq spatial-transcriptomics squidpy

A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of high-resolution histology images" developed principally for applications to registration of spatial transcriptomics image data.

✭ 18

python Jupyter Notebook neural-networks image-registration spatial-transcriptomics tissue-registration visium-st

1-6 of 6 spatial-transcriptomics projects