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7 open source projects by snakemake-workflows

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1. Rna Seq Star Deseq2
RNA-seq workflow using STAR and DESeq2
✭ 158
pythonngsreproducible-science
2. Dna Seq Gatk Variant Calling
This Snakemake pipeline implements the GATK best-practices workflow
✭ 133
pythonreproducibility
3. Cookiecutter Snakemake Workflow
A cookiecutter template for Snakemake workflows
✭ 43
python
4. Dna Seq Varlociraptor
Variant detection with Delly and Freebayes, followed by statistical assessment with Varlociraptor
✭ 31
python
5. docs
Documentation of the Snakemake-Workflows project
✭ 123
snakemakesnakemake-workflows
6. rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
✭ 56
rpythonrna-seqsnakemakereproducibilitykallistodifferential-expressionsleuthsciworkflows
7. ngs-test-data
A workflow for creating small NGS test data sets, useful for continuous integration.
✭ 19
pythonsnakemakengssnakemake-workflows
1-7 of 7 user projects