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Top 15 differential-expression open source projects

Experimental design framework for scRNAseq population studies (eQTL and DE)

✭ 19

r HTML CSS single-cell differential-expression eqtl power-analysis

Compare different differential abundance and expression methods

✭ 34

r metagenomics rnaseq auc proteomics metabolomics microbiome false-positive-control differential-expression 16s otu marker-gene-analysis relative-abundances compare-methods differential-abundance-methods

Make rapid visualizations of RNA-seq data in R

✭ 19

r visualization gene-expression rna-seq-analysis differential-expression data-munging

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

✭ 24

r rna-seq shiny reproducible-research bioconductor user-friendly rna-seq-analysis differential-expression

Porting DESeq2 and DEXSeq into python via rpy2

✭ 49

Jupyter Notebook python r Dockerfile rna-seq differential-expression

Discrete Distributional Differential Expression

✭ 19

python differential-expression single-cell-rna-seq human-cell-atlas

Fit generalized linear models in python.

✭ 22

python tensorflow differential-expression generalized-linear-models

heatmap-scatter-dash

Interactive visualizations for differential expression

✭ 25

python shell javascript CSS Dockerfile visualization docker refinery differential-expression

Differential expression analysis for single-cell RNA-seq data.

✭ 137

python bioinformatics tensorflow transcriptomics gene-set-enrichment differential-expression single-cell-rna-seq

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

✭ 18

r python Dockerfile rna-seq report bioconductor differential-expression qc smallrna

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

✭ 56

r python rna-seq snakemake reproducibility kallisto differential-expression sleuth sciworkflows

bioc 2020 tidytranscriptomics

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

✭ 25

r Dockerfile workshop heatmap tidy-data tidyverse pca bioconductor mds transcriptomics differential-expression tidybulk bioc2020

command line bioinformatic scripts written in R

✭ 20

r bioinformatics statistics fasta differential-expression

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

✭ 24

workflow pipeline rna transcriptome rna-seq-analysis differential-expression lncrna non-coding nf-core long-non-coding

1-15 of 15 differential-expression projects