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Top 5 gatk open source projects

sentieon-dnaseq

Sentieon DNAseq

✭ 18

shell acceleration gatk bioinformatics-pipeline variant-calling dnaseq bwa-mem dna-sequencing sentieon gatk4 genomics-data

Genomics using open source tools, running on GCP or AWS

✭ 30

shell Dockerfile aws bioinformatics gcp gatk variants cancer-genomics genome-sequencing genome-analysis variant-calls genomics-analysis

Whole Exome/Whole Genome Sequencing alignment pipeline

✭ 19

Nextflow HTML Dockerfile shell Roff ngs gatk alignment bwa whole-exome-sequencing whole-genome-sequencing

Exome/Capture/RNASeq Pipeline Implementation using snakemake

✭ 40

python perl r shell snakemake pipeline panel ngs tophat gatk rnaseq fastq exome ngs-pipeline annovar snpeff

learning vcf file

Learning the Variant Call Format

✭ 104

perl shell groovy r vcf gatk vcftools bcftools vcf-files call-variants vcf-format multi-sample-vcf

1-5 of 5 gatk projects