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Top 5 histopathology open source projects

Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.

✭ 32

python shell deep-learning semi-supervised-learning digital-pathology self-supervised-learning camelyon16 histopathology breastpathq teacher-student-training annotation-efficient

C2C

Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.

✭ 30

python Jupyter Notebook deep-learning weakly-supervised-learning whole-slide-imaging multiple-instance-learning histopathology

FAIRY

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

✭ 43

python fish deep-learning image-retrieval histology bioimage-informatics pathology bioimage-analysis image-search-engine histopathology vqvae wsi-images mahmoodlab

Patch-GCN

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

✭ 63

python Jupyter Notebook gcn pathology wsi survival-prediction histopathology wsi-images mahmoodlab

TOAD

AI-based pathology predicts origins for cancers of unknown primary - Nature

✭ 138

python deep-learning cup deep cancer-imaging-research cancer-research histology bioimage-informatics pathology cancer-detection bioimage-analysis toad histopathology wsi-images mahmoodlab unknown-primary

1-5 of 5 histopathology projects