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Top 8 digital-pathology open source projects

A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.

✭ 71

Jupyter Notebook python convolutional-neural-networks semantic-segmentation digital-pathology whole-slide-imaging

SSL CR Histo

Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.

✭ 32

python shell deep-learning semi-supervised-learning digital-pathology self-supervised-learning camelyon16 histopathology breastpathq teacher-student-training annotation-efficient

paquo

PAthological QUpath Obsession - QuPath and Python conversations

✭ 42

python digital-pathology qupath

FAST-Pathology

⚡ Open-source software for deep learning-based digital pathology

✭ 54

C++machine-learning opengl deep-learning deployment tensorflow opencl inference pytorch software convolutional-neural-networks digital-pathology tensorrt computational-pathology openvino free-to-use

Deeplearning-digital-pathology

Full package for applying deep learning to virtual slides.

✭ 59

python caffe deep-learning tensorflow keras openslide digital-pathology

Cytomine-core

Cytomine-Core is the main web server implementing the Cytomine API

✭ 70

groovy java c shell Batchfile Dockerfile machine-learning digital-pathology whole-slide-imaging computational-pathology cytomine

FocusLiteNN

Official PyTorch and MATLAB implementations of our MICCAI 2020 paper "FocusLiteNN: High Efficiency Focus Quality Assessment for Digital Pathology"

✭ 28

python matlab deep-neural-networks deep-learning image-processing pytorch convolutional-neural-network medical-image-processing digital-pathology image-quality-assessment network-distillation pathological-images

cucim

No description or website provided.

✭ 218

Jupyter Notebook python C++CMake shell c computer-vision gpu cuda image-processing nvidia medical-imaging segmentation image-analysis microscopy digital-pathology image-data multidimensional-image-processing

1-8 of 8 digital-pathology projects