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Top 6 whole-genome-sequencing open source projects

A handy variant calling pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

✭ 64

python perl bioinformatics ngs vcf bioinformatics-pipeline variant-calling whole-genome-sequencing

alignment-nf

Whole Exome/Whole Genome Sequencing alignment pipeline

✭ 19

Nextflow HTML Dockerfile shell Roff ngs gatk alignment bwa whole-exome-sequencing whole-genome-sequencing

STRling

Detect novel (and reference) STR expansions from short-read data

✭ 42

nim python groovy str hacktoberfest whole-genome-sequencing nim-lang short-tandem-repeats

pipeline-structural-variation

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

✭ 104

python nanopore whole-genome-sequencing structural-variation long-reads

mity

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

✭ 27

bioinformatics genomics whole-genome-sequencing precision-medicine mitochondria

BACTpipe

BACTpipe: An assembly and annotation pipeline for bacterial genomics

✭ 19

groovy Nextflow python shell Makefile bioinformatics pipeline annotation bacteria whole-genome-sequencing

1-6 of 6 whole-genome-sequencing projects