Top 9 bacteria open source projects

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

A scalable bacterial genome assembly, annotation and analysis pipeline

Identify phage regions in bacterial genomes for masking purposes

💾 📃 "Reads to report" for public health and clinical microbiology

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

BACTpipe: An assembly and annotation pipeline for bacterial genomics

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data