dolphinnextA graphical user interface for distributed data processing of high throughput genomics
Stars: ✭ 92 (+283.33%)
Mutual labels: rna-seq, chip-seq
CD4-csawReproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
Stars: ✭ 16 (-33.33%)
Mutual labels: rna-seq, chip-seq
haystack bioHaystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Stars: ✭ 42 (+75%)
Mutual labels: rna-seq, chip-seq
Protocols-4pubMulti-omics analysis protocols by Lyu.
Stars: ✭ 37 (+54.17%)
Mutual labels: rna-seq, chip-seq
GGR-cwlCWL tools and workflows for GGR
Stars: ✭ 20 (-16.67%)
Mutual labels: rna-seq, chip-seq
scCATCHAutomatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Stars: ✭ 137 (+470.83%)
Mutual labels: rna-seq
snakefiles🐍 Snakefiles for common RNA-seq data analysis workflows.
Stars: ✭ 78 (+225%)
Mutual labels: rna-seq
elm-from-ground-upThis lab is designed to be an adjunct to learning Elm. Go from the most basic "Hello World" through data types and more advanced features in this example.
Stars: ✭ 17 (-29.17%)
Mutual labels: training-materials
GREINGREIN : GEO RNA-seq Experiments Interactive Navigator
Stars: ✭ 40 (+66.67%)
Mutual labels: rna-seq
python-functions-and-modulesPython3 teaching materials for functions and modules (1 day)
Stars: ✭ 13 (-45.83%)
Mutual labels: training-materials
bioinf-commonsBioinformatics library in Kotlin
Stars: ✭ 21 (-12.5%)
Mutual labels: chip-seq
training-materialsNo description or website provided.
Stars: ✭ 47 (+95.83%)
Mutual labels: training-materials
pychopperA tool to identify, orient, trim and rescue full length cDNA reads
Stars: ✭ 74 (+208.33%)
Mutual labels: rna-seq
OrchestratingSingleCellAnalysis-releaseAn online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
Stars: ✭ 35 (+45.83%)
Mutual labels: rna-seq
dropPipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Stars: ✭ 69 (+187.5%)
Mutual labels: rna-seq
READemptionA pipeline for the computational evaluation of RNA-Seq data
Stars: ✭ 24 (+0%)
Mutual labels: rna-seq
Whippet.jlLightweight and Fast; RNA-seq quantification at the event-level
Stars: ✭ 85 (+254.17%)
Mutual labels: rna-seq
TransPiTransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Stars: ✭ 18 (-25%)
Mutual labels: rna-seq
RATTLEReference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Stars: ✭ 35 (+45.83%)
Mutual labels: rna-seq
dee2Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
Stars: ✭ 32 (+33.33%)
Mutual labels: rna-seq