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Top 10 chip-seq open source projects

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

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python c shell CSS awk r bioinformatics dnase-seq genomics ngs chip-seq atac-seq footprinting differential-peak-calling

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

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r python rna-seq reproducible-research bioinformatics-pipeline bioconductor chip-seq

cruk-summer-school-2018

Summer school course materials collection

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HTML rna-seq chip-seq training-materials

Bioinformatics library in Kotlin

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kotlin hmm bioinformatics progress methylation dataset fasta chip-seq sampling bed bam dataframe fastq mixture hypothesis-testing 2bit cancellable dna-sequence

MAnorm2 for Normalizing and Comparing ChIP-seq Samples

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HTML r chip-seq r-package differential-analysis winsorize-values empirical-bayes

CWL tools and workflows for GGR

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Common Workflow Language python Jinja shell dnase-seq rna-seq chip-seq atac-seq cwl

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

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r dataviz rstats bioconductor data-analysis chip-seq atac-seq wgbs epigenomics

A graphical user interface for distributed data processing of high throughput genomics

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PHP javascript Nextflow CSS hack Twig bioinformatics rna-seq pipeline drag-and-drop pipelines chip-seq atac-seq clusters workflows amazon-cloud dolphinnext share-pipelines

Multi-omics analysis protocols by Lyu.

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HTML r rna-seq chip-seq atac-seq wgbs

1-10 of 10 chip-seq projects