776 Open source projects that are alternatives of or similar to peppy

A simplified pipeline for ctDNA sequencing data analysis

Tools for working with genomic and high throughput sequencing data.

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

NGLess: NGS with less work

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

UGENE is free open-source cross-platform bioinformatics software

(No maintenance) Detect gene fusion directly from raw fastq files

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Tools to process and analyze deep sequencing data.

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Java utilities for Bioinformatics

A robust model for quantitative comparison of ChIP-Seq data sets.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A native Go SDK for the Extensible Metadata Platform (XMP)

C library for high-throughput sequencing data formats

Data intensive science for everyone.

Official code repository for GATK versions 4 and up

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

Meta data server & client tools for game development

R package for analyzing single-cell RNA-seq data

A package for designing compact and comprehensive capture probe sets.

Method to optimally select samples for validation and resequencing

Read DNA sequences from colourful Microsoft Word documents

Metadata storage service

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

Fast alignment and preprocessing of chromatin profiles

깃허브 커밋 기록을 아름답게 꾸미는 프로젝트 ⭐

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

Per-base per-nucleotide depth analysis

Mapping-Assisted Targeted-Assembly for Metagenomics

Genomics data visualization in Python by using matplotlib.

A computational library for learning and evaluating biological knowledge graph embeddings

GitHub Action that syncs package.json with the repository metadata.

The Skyrim masterlist.

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Assembling the cause of phenotypes and genotypes from NGS data

Provide R access to the NCI Genomic Data Commons portal.

generate POCO classes from OData service

A library to build and execute typed scientific workflows

Stacked Denoising AutoEncoder based on TensorFlow

Useful bioinformatic scripts

exploratory and interactive microbiome analyses based on heatmaps

Metadata from Project Gutenberg

The TES V: Skyrim Special Edition masterlist.

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

🚦 Run Picard on BAM files and collate 90 metrics into one file.

Fast motif matching in R

GWAS summary statistics files QC tool

Open source Image Gallery with tons of feature .

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.