24 open source projects by nanoporetech

Sequence correction provided by ONT Research

Bonito - A PyTorch Basecaller for Oxford Nanopore Reads

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

Training models for basecalling Oxford Nanopore reads

ONT assembly and Illumina polishing pipeline

Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group

Blitzing Fast CTC Beam Search Decoder

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

Cliveome ONTHG1 data release : Updated with GridION runs

qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

Typescript translation of the jmespath.js package

Analysis components from Oxford Nanopore Research

Protobuf and gRPC specifications for the MinKNOW API

A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt

VBZ compression plugin for nanopore signal data

A tool to identify, orient, trim and rescue full length cDNA reads

Predictive kmer models for development use

Pore-C support

Analysis pipelines from Oxford Nanopore Technologies' Research Division

Tools and software library developed by the ONT Applications group

Pipeline for annotating genomes using long read transcriptomics data with pinfish

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

Python bindings to minimap2

Research release basecalling models and configurations