scarfToolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
Stars: ✭ 54 (-77.02%)
Mutual labels: single-cell-genomics, single-cell-rna-seq
cellrankCellRank for directed single-cell fate mapping
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Mutual labels: single-cell-genomics, single-cell-rna-seq
MERINGUEcharacterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
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Mutual labels: spatial-analysis, spatial-transcriptomics
Slicer-DeepInfer3D Slicer Module for connecting to model repository and use models for image analysis.
Stars: ✭ 23 (-90.21%)
Mutual labels: image-analysis
spatial efdA spatial aware implementation of elliptical Fourier analysis
Stars: ✭ 19 (-91.91%)
Mutual labels: spatial-analysis
Python Computer Vision from ScratchThis repository explores the variety of techniques commonly used to analyze and interpret images. It also describes challenging real-world applications where vision is being successfully used, both for specialized applications such as medical imaging, and for fun, consumer-level tasks such as image editing and stitching, which students can apply…
Stars: ✭ 219 (-6.81%)
Mutual labels: image-analysis
st gridnetA Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of high-resolution histology images" developed principally for applications to registration of spatial transcriptomics image data.
Stars: ✭ 18 (-92.34%)
Mutual labels: spatial-transcriptomics
dynmethodsA collection of 50+ trajectory inference methods within a common interface 📥📤
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Mutual labels: single-cell-rna-seq
topoA Geometry library for Elixir that calculates spatial relationships between two geometries
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Mutual labels: spatial-analysis
ggimgggimg: Graphics Layers for Plotting Image Data with ggplot2
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Mutual labels: image-analysis
TexturizeA unified framework for example-based texture synthesis, developed alongside my master's thesis.
Stars: ✭ 15 (-93.62%)
Mutual labels: image-analysis
miplibA Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
Stars: ✭ 54 (-77.02%)
Mutual labels: image-analysis
ncemLearning cell communication from spatial graphs of cells
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Mutual labels: squidpy
scRNAseq cell cluster labelingScripts to run and benchmark scRNA-seq cell cluster labeling methods
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Mutual labels: single-cell-rna-seq
geosparkbring sf to spark in production
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Mutual labels: spatial-analysis
OMETIFF.jlI/O operations for OME-TIFF files in Julia
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Mutual labels: image-analysis
computer-vision-notebooks👁️ An authorial set of fundamental Python recipes on Computer Vision and Digital Image Processing.
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Mutual labels: image-analysis
SyConnToolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
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Mutual labels: image-analysis
QuadTreeAndroidLibrary that helps to implement the QuadTree in android, by using splitting images
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Mutual labels: image-analysis
fpzipCython bindings for fpzip, a floating point image compression algorithm.
Stars: ✭ 24 (-89.79%)
Mutual labels: image-analysis
