3 open source projects by 4dn-dcic

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

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Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

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python HTML shell docker aws bioinformatics snakemake aws-lambda pipelines conda cwl aws-step-function wdl-workflow cwl-workflow snakemake-workflow

3. docker-4dn-hic

Docker for 4DN Hi-C processing pipeline

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Common Workflow Language shell Dockerfile python docker bioinformatics hi-c cooler bwa pairix juicer pairsqc

1-3 of 3 user projects