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Top 4 cwl-workflow open source projects

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

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python HTML shell docker aws bioinformatics snakemake aws-lambda pipelines conda cwl aws-step-function wdl-workflow cwl-workflow snakemake-workflow

hotsub

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

✭ 29

go shell Dockerfile TeX Common Workflow Language wdl docker aws workflow bioinformatics workflow-engine gcp docker-machine batch-job cwl etl-framework wdl-workflow cwl-workflow

workflows

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

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wdl Dockerfile python shell workflow bioinformatics genomics workflow-engine computational-biology next-generation-sequencing cwl workflows cromwell wdl-workflow cwl-workflow bioinformatics-workflows stjudecloud

pm4ngs

Project Manager for NGS data analysis

✭ 21

python bioinformatics next-generation-sequencing rnaseq ngs-analysis ngs-pipeline cwl-workflow chipseq chipexo

1-4 of 4 cwl-workflow projects