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All Projects → vitessce → vitessceR

vitessce / vitessceR

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R API and htmlwidget for Vitessce

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data-visualizationsingle-cellhtmlwidgetgehlenborglabkharchenkolabvitesscerstudio-widget

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vitessce-r

R package version Vitessce JS dependency version docs

R API and htmlwidget facilitating interactive visualization of spatial single-cell data with Vitessce.

Installation

Installation requires R 4.0.0 or greater.

install.packages("devtools")
devtools::install_github("vitessce/vitessceR")

Usage

library(vitessceR)

vc <- VitessceConfig$new()
vc$widget()

For full examples, visit the documentation.

For questions and help with using the package, please open a discussion.

Screenshot of RStudio

Development

npm install
npm run build
setwd("path/to/vitessceR")
install.packages("htmlwidgets")
install.packages("devtools")
devtools::install()
devtools::load_all()

Testing

devtools::check()
devtools::test()

Documentation

install.packages("devtools")
install.packages("pkgdown")
devtools::document()
pkgdown::build_site()

Documentation is automatically deployed to GitHub pages with GitHub actions.

Deployment

Currently, the package is only distributed through GitHub. In the future, we plan to submit the package to CRAN or Bioconductor.

To increment the package version, update it in DESCRIPTION.

Resources

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].