460 Open source projects that are alternatives of or similar to 16gt

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

A package for designing compact and comprehensive capture probe sets.

A genome browser that shows long reads and complex variants better

Efficient variant-call data storage and retrieval library using the TileDB storage library.

Next generation sequencing reads de novo assembler.

Official code repository for GATK versions 4 and up

highly-efficient & lightweight mutation signature matrix aggregation

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Syntax highlighting for computational biology

cython + htslib == fast VCF and BCF processing

GenomeTools genome analysis system.

🔬 Assemble large genomes using short reads

Structural variant toolkit for VCFs

Bayesian genotyper for structural variants

Scalable genomic data analysis.

🌈Scaffold genome sequence assemblies using linked read sequencing data

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

C library for high-throughput sequencing data formats

A collection of scripts and notes related to genomics and bioinformatics

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Toolset for SV simulation, comparison and filtering

Method to optimally select samples for validation and resequencing

Genotyping of segregating mobile elements insertions

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

Haplotype VCF comparison tools

annotate a VCF with other VCFs/BEDs/tabixed files

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

BWK awk modified for biological data

Robust, flexible and resource-efficient pipelines using Go and the commandline

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Tools to process and analyze deep sequencing data.

(formerly eelpond) an automated RNA-Seq workflow system

Data intensive science for everyone.

Versatile open-source tool for microbiome analysis

MMseqs2: ultra fast and sensitive search and clustering suite

Toolkit for processing sequences in FASTA/Q formats

Workflow Description Language - Specification and Implementations

d3 library to build circular graphs

Fast & accurate alignment of barcoded short-reads

JAMP - Just Another Metabarcoding Pipeline

Aggregate results from bioinformatics analyses across many samples into a single report.

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Bioinformatics containers

A cross-platform command-line tool for executing jobs in parallel

Tools for working with SAM/BAM data

A plotly.js React component from Plotly 📈

The next version of bwa-mem

Python library to facilitate genome assembly, annotation, and comparative genomics

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

A modern genome browser built with JavaScript and HTML5.

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

an implementation of NSGA-II in java

Python and C++ code for reading and writing genomics data.

A fast and sensitive gapped read aligner

Signal-level algorithms for MinION data

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Plant image analysis using OpenCV