All Projects → Beast Mcmc → Similar Projects or Alternatives

122 Open source projects that are alternatives of or similar to Beast Mcmc

Beast2
Bayesian Evolutionary Analysis by Sampling Trees
Stars: ✭ 156 (+34.48%)
Mutual labels:  mcmc, evolution
phyml
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
Stars: ✭ 125 (+7.76%)
Mutual labels:  evolution, mcmc
Bayadera
High-performance Bayesian Data Analysis on the GPU in Clojure
Stars: ✭ 342 (+194.83%)
Mutual labels:  mcmc
Deepbayes
Bayesian methods in deep learning Summer School
Stars: ✭ 15 (-87.07%)
Mutual labels:  mcmc
BayesianTutorials
Implementing MCMC sampling from scratch in R for various Bayesian models
Stars: ✭ 75 (-35.34%)
Mutual labels:  mcmc
Unix History Repo
Continuous Unix commit history from 1970 until today
Stars: ✭ 4,851 (+4081.9%)
Mutual labels:  evolution
Dblink
Distributed Bayesian Entity Resolution in Apache Spark
Stars: ✭ 38 (-67.24%)
Mutual labels:  mcmc
Unix History Make
Code and data to create a git repository representing the Unix source code history
Stars: ✭ 258 (+122.41%)
Mutual labels:  evolution
Darwin
Evolutionary Algorithms Framework
Stars: ✭ 72 (-37.93%)
Mutual labels:  evolution
pioreactor
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
Stars: ✭ 28 (-75.86%)
Mutual labels:  evolution
Cafe fig
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
Stars: ✭ 22 (-81.03%)
Mutual labels:  evolution
shorelark
Simulation of life & evolution
Stars: ✭ 109 (-6.03%)
Mutual labels:  evolution
Pymc3
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Aesara
Stars: ✭ 6,214 (+5256.9%)
Mutual labels:  mcmc
Quota Alignment
Guided synteny alignment between duplicated genomes (within specified quota constraint)
Stars: ✭ 47 (-59.48%)
Mutual labels:  evolution
Bda r demos
Bayesian Data Analysis demos for R
Stars: ✭ 409 (+252.59%)
Mutual labels:  mcmc
Getdist
MCMC sample analysis, kernel densities, plotting, and GUI
Stars: ✭ 80 (-31.03%)
Mutual labels:  mcmc
Sharpneat
SharpNEAT - Evolution of Neural Networks. A C# .NET Framework.
Stars: ✭ 273 (+135.34%)
Mutual labels:  evolution
Psgld
AAAI & CVPR 2016: Preconditioned Stochastic Gradient Langevin Dynamics (pSGLD)
Stars: ✭ 28 (-75.86%)
Mutual labels:  mcmc
autoreparam
Automatic Reparameterisation of Probabilistic Programs
Stars: ✭ 29 (-75%)
Mutual labels:  mcmc
Nimble
The base NIMBLE package for R
Stars: ✭ 95 (-18.1%)
Mutual labels:  mcmc
mc3
Python MCMC Sampler
Stars: ✭ 25 (-78.45%)
Mutual labels:  mcmc
Pygtc
Make a sweet giant triangle confusogram (GTC) plot
Stars: ✭ 13 (-88.79%)
Mutual labels:  mcmc
BayesHMM
Full Bayesian Inference for Hidden Markov Models
Stars: ✭ 35 (-69.83%)
Mutual labels:  mcmc
Turing.jl
Bayesian inference with probabilistic programming.
Stars: ✭ 1,150 (+891.38%)
Mutual labels:  mcmc
cmdstanr
CmdStanR: the R interface to CmdStan
Stars: ✭ 82 (-29.31%)
Mutual labels:  mcmc
Bda py demos
Bayesian Data Analysis demos for Python
Stars: ✭ 781 (+573.28%)
Mutual labels:  mcmc
evolution-ui
Cutting Edge UI Components for Modern Developers
Stars: ✭ 30 (-74.14%)
Mutual labels:  evolution
Invaderz
Space invaders, but the invaders evolve with genetic algorithm
Stars: ✭ 686 (+491.38%)
Mutual labels:  evolution
Evvo
Solve multi-objective optimization problems with distributed evolutionary algorithms
Stars: ✭ 61 (-47.41%)
Mutual labels:  evolution
Convchain
Bitmap generation from a single example with convolutions and MCMC
Stars: ✭ 581 (+400.86%)
Mutual labels:  mcmc
Bat.jl
A Bayesian Analysis Toolkit in Julia
Stars: ✭ 82 (-29.31%)
Mutual labels:  mcmc
Dbda Python
Doing Bayesian Data Analysis, 2nd Edition (Kruschke, 2015): Python/PyMC3 code
Stars: ✭ 502 (+332.76%)
Mutual labels:  mcmc
Plant
Trait-Driven Models of Ecology and Evolution 🌲
Stars: ✭ 39 (-66.38%)
Mutual labels:  evolution
Ecosim
An interactive ecosystem and evolution simulator written in C and OpenGL, for GNU/Linux.
Stars: ✭ 382 (+229.31%)
Mutual labels:  evolution
Ggmcmc
Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference
Stars: ✭ 95 (-18.1%)
Mutual labels:  mcmc
Sproutlife
Evolving version of Conway’s Game of Life.
Stars: ✭ 298 (+156.9%)
Mutual labels:  evolution
Cmdstan.jl
CmdStan.jl v6 provides an alternative, older Julia wrapper to Stan's `cmdstan` executable.
Stars: ✭ 30 (-74.14%)
Mutual labels:  mcmc
Bayesplot
bayesplot R package for plotting Bayesian models
Stars: ✭ 276 (+137.93%)
Mutual labels:  mcmc
Posterior
The posterior R package
Stars: ✭ 75 (-35.34%)
Mutual labels:  mcmc
smfsb
Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology
Stars: ✭ 27 (-76.72%)
Mutual labels:  mcmc
Cellsim 2
Simulating complete lives of different cellular animals and plants. Evolution, inheritance, predation and more.
Stars: ✭ 28 (-75.86%)
Mutual labels:  evolution
archaeopteryx-js
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
Stars: ✭ 27 (-76.72%)
Mutual labels:  evolution
Advancedhmc.jl
Robust, modular and efficient implementation of advanced Hamiltonian Monte Carlo algorithms
Stars: ✭ 100 (-13.79%)
Mutual labels:  mcmc
dishtiny
DISHTINY: A Platform for Studying Open-Ended Evolutionary Transitions in Individuality
Stars: ✭ 25 (-78.45%)
Mutual labels:  evolution
Thrive
The main repository for the development of the evolution game Thrive.
Stars: ✭ 874 (+653.45%)
Mutual labels:  evolution
Torsten
library of C++ functions that support applications of Stan in Pharmacometrics
Stars: ✭ 38 (-67.24%)
Mutual labels:  mcmc
Gerrychain
Use MCMC to analyze districting plans and gerrymanders
Stars: ✭ 68 (-41.38%)
Mutual labels:  mcmc
tiny gp
Tiny Genetic Programming in Python
Stars: ✭ 58 (-50%)
Mutual labels:  evolution
Owl
Owl - OCaml Scientific and Engineering Computing @ http://ocaml.xyz
Stars: ✭ 919 (+692.24%)
Mutual labels:  mcmc
mcscan
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
Stars: ✭ 18 (-84.48%)
Mutual labels:  evolution
Machine Learning Numpy
Gathers Machine learning models using pure Numpy to cover feed-forward, RNN, CNN, clustering, MCMC, timeseries, tree-based, and so much more!
Stars: ✭ 90 (-22.41%)
Mutual labels:  mcmc
pyaneti
A multi-planet Radial Velocity and Transit modelling software
Stars: ✭ 26 (-77.59%)
Mutual labels:  mcmc
Bayesian Neural Networks
Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more
Stars: ✭ 900 (+675.86%)
Mutual labels:  mcmc
kmer-homology-paper
Manuscript for functional prediction of transcriptomic “dark matter” across species
Stars: ✭ 12 (-89.66%)
Mutual labels:  evolution
Bayesiantools
General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
Stars: ✭ 66 (-43.1%)
Mutual labels:  mcmc
SMC.jl
Sequential Monte Carlo algorithm for approximation of posterior distributions.
Stars: ✭ 53 (-54.31%)
Mutual labels:  mcmc
Boltzmann Machines
Boltzmann Machines in TensorFlow with examples
Stars: ✭ 768 (+562.07%)
Mutual labels:  mcmc
Gpstuff
GPstuff - Gaussian process models for Bayesian analysis
Stars: ✭ 106 (-8.62%)
Mutual labels:  mcmc
Turingmodels.jl
Turing version of StatisticalRethinking models.
Stars: ✭ 98 (-15.52%)
Mutual labels:  mcmc
Paramonte
ParaMonte: Plain Powerful Parallel Monte Carlo and MCMC Library for Python, MATLAB, Fortran, C++, C.
Stars: ✭ 88 (-24.14%)
Mutual labels:  mcmc
1-60 of 122 similar projects