430 Open source projects that are alternatives of or similar to Benchmarking Tools

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

GCP Essentials for Bioinformatics Researchers

Bayesian genotyper for structural variants

A friendly next-generation interface for Genomic data discovery powered by InterMine

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Flexible genotype query among 30,000+ samples whole-genome

HTTP server benchmarking tool

Lean Haskell Benchmarking

A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍

Framework for building fast genomics web tools with WebAssembly and WebWorkers

Structural variant toolkit for VCFs

Simulate genealogical trees and genomic sequence data using population genetic models

Pan-genome wide association studies

An R package for creating Q-Q and manhattan plots from GWAS results

Envoy performance testing

AQUAS TF and histone ChIP-seq pipeline

📉 Run Go benchmarks, publish results to an interactive web app, and check for performance regressions in your pull requests

A tool to circularize genome assemblies

Benchmarks: write in Scala or JS, run in your browser. Live demo:

A Benchmark Suite for Cloud Services.

Generate performance reports from your django database performance tests.

Comparison of methods for trajectory inference on single-cell data 🥇

Genomics Extension for SQLite

Benchmarking Denoising Algorithms with Real Photographs

Guided synteny alignment between duplicated genomes (within specified quota constraint)

Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features

BenchExec: A Framework for Reliable Benchmarking and Resource Measurement

Script to automatically create and run IGV snapshot batchscripts

Collection of popular and reproducible image denoising works.

R package to interface with OpenML

A collection of scripts and notes related to genomics and bioinformatics

PHP Benchmarking framework

Code examples of fast and simple k-mer counters for tutorial purposes

A fast whole-genome aligner based on de Bruijn graphs

Antimicrobial Resistance Identification By Assembly

An interactive web tool for quality control of DNA sequencing data

A cool place to store your Hi-C

jsperf.com v2. https://github.com/h5bp/lazyweb-requests/issues/174

The Phoronix Test Suite open-source, cross-platform automated testing/benchmarking software.

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Kotlin friendly library to measure elapsed time for methods, code blocks, RxJava chains

A collaboratively written review paper on deep learning, genomics, and precision medicine

🌌 Collection of articles and tools to efficiently profile Node.js

Model and predict short DNA sequence features with neural networks

Deep Learning Benchmarking Suite

Development repository for the Bioconductor package 'mixOmics '

Simple NVME/SAS/SATA SSD test framework for Linux and Windows

Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

jsbench.me - JavaScript performance benchmarking playground

Bioinformatics library for .NET

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

Test/benchmark regression and comparison system with dashboard

A non-sampling profiler purpose built to measure and optimize performance of ultra low latency/real time systems

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

NGLess: NGS with less work

variant expressions, annotation, and filtering for great good.