598 Open source projects that are alternatives of or similar to Bioperl Live

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Reinforced Recommendation toolkit built around pytorch 1.7

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

(No maintenance) Detect gene fusion directly from raw fastq files

Plant image analysis using OpenCV

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Ultra-fast and memory-efficient (meta-)genome assembler

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

A fast, versatile and user-friendly landscape evolution model

Generating UI test label automatically for iOS.

Structural variant toolkit for VCFs

Open-source bioinformatics components for Dash

Density-functional toolkit

A React-based UI toolkit for the web

Conda recipes for the bioconda channel.

Interactive network visualization in Python and Dash, powered by Cytoscape.js

A genome browser that shows long reads and complex variants better

Efficient pythonic random access to fasta subsequences

Manage a RabbitMQ cluster easily.

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

A curated list of bioinformatics bench-marking papers and resources.

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

A Deep Graph-based Toolbox for Fraud Detection

A curated list of resources for learning bioinformatics.

An open source platform for managing and analyzing biomedical big data

Bayesian genotyper for structural variants

Structural variant and indel caller for mapped sequencing data

Extremely flexible golang deep comparison, extends the go testing package, tests HTTP APIs and provides tests suite

A high-performance, Pythonic language for bioinformatics

A update to Component factory's krypton toolkit to support the .NET 4.7 framework.

A React web application to query and share any PostgreSQL database.

Deep learning infrastructure for bioinformatics

👁 Python library to plot DNA sequence features (e.g. from Genbank files)

Biological sequences for the julia language

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Simple and powerful toolkit for BoltDB

Example client programs for Saphetor's VarSome annotation API

An interactive web tool for quality control of DNA sequencing data

Real-time species-typing visualisation for nanopore data.

Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.

Aim to be the bioinformatics repository with more and newer packages

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

This library tackles the construction and efficient execution of computational chemistry workflows

An powerful enhanced toolkit of MyBatis for simplify development

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

The START App: R Shiny Transcriptome Analysis Resource Tool

The uncompromising Snakemake code formatter

Toolset for SV simulation, comparison and filtering

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

Pokémon (3DS) ROM Editor & Randomizer

Strelka2 germline and somatic small variant caller

Mercury is a hacking tool used to collect information and use the information to further hurt the target

🔬 Assemble large genomes using short reads

A powerful open source data warehouse system

Pokémon (Nintendo Switch) ROM Editor & Randomizer

Benchmarking programming languages/implementations for common tasks in Bioinformatics

(formerly eelpond) an automated RNA-Seq workflow system