72 Open source projects that are alternatives of or similar to cancer-data

Provide R access to the NCI Genomic Data Commons portal.

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Interactive R package to quantify, analyse and visualise alternative splicing

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

List of IARC bioinformatics nextflow pipelines

Aplicativo para o projeto "Anjos do SuperAção"

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

🐶 React hook for making isomorphic http requests

R package to access DoRothEA's regulons

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

Python mutation testing: test your tests! Safely run mutation trials without source code modifications and see what will get past your test suite.

A Python-Tensorflow neural network for classifying cancer data

Power Query M functions for working with Tabular Data Packages (Frictionless Data) in Power BI and Excel

Cancer Predisposition Sequencing Reporter (CPSR)

A Slicer extension to provide a GUI around pyradiomics

Bioconductor package for management of multi-assay data

Collections of queries and mutations that hopefully help you in a Strapi project powered by GraphQL API 🚀

PHP Mutation Testing library

Java Based Cross-Platform CSGO Offset and Netvar Scanner

Your local Flux surgeon

A React HOC wrapper for Apollo GraphQL mutation, provides loading and error in props

light zero dependency graphql-client, supporting cache and SSR

The official LabJack Linux and Mac OS X USB driver

Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.

Multi-task deep learning framework for multi-omics data analysis

Flexible and efficient data processing engine and an evolution of the popular Scramjet Framework based on node.js. Our Transform Hub was designed specifically for data processing and has its own unique algorithms included.

Text mining cancer biomarkers for the CIVIC database

Cancer-dedicated gene set interpretation

Fast and accurate gene fusion detection from RNA-Seq data

A basic framework for pulmonary nodule detection and characterization in CT

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Gene fusion detection and visualization

The official Python modules and classes for interacting with the LabJack U3, U6, UE9 and U12

Social Media Mining Toolkit (SMMT) main repository

Fast visualization tool for large-scale and high dimensional single-cell data

XENA is the managed remote administration platform for botnet creation & development powered by blockchain and machine learning. Aiming to provide an ecosystem which serves the bot herders. Favoring secrecy and resiliency over performance. It's micro-service oriented allowing for specialization and lower footprint. Join the community of the ulti…

Spatial alignment of single cell transcriptomic data.

📗🌐 🚢 Comprehensive and exhaustive JavaScript & Node.js testing best practices (August 2021)

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

mutator is an experimental suite of tools aimed at analysis and automation of C/C++ code development

CNN histopathologic tumor identifier.

A fast and modern graphql client designed with simplicity in mind.

Federated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/

Regexp based tool for mutating generic source code across numerous languages

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Inference of switch-like differential expression along single-cell trajectories

Datastructures and algorithms for working with genetic variation

Web client for CIViC: Clinical Interpretations of Variants in Cancer

MCC Universal Library for Linux

A simple simulation in Unity, which uses genetic algorithm to optimize forces applied to cubes

Flow-based synchronized parallel DAQ from diverse sources and flexible control for neuroscience experiments

CMU 18545 FPGA project -- Multi-channel ultrasound data acquisition and beamforming system.

Make rapid visualizations of RNA-seq data in R

An interactive web portal for exploring immuno-oncology data

Genetics (Initialization, Selection, Crossover, Mutation)

Mutation testing for JavaScript and Node.js

Backend Server for CIViC Project

This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biological information"

3D hotspot mutation proximity analysis tool