1944 Open source projects that are alternatives of or similar to Canvasxpress

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Toolkit for preparing genomes for submission to NCBI

Simple pure Python SAM parser and objects for working with SAM records

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Compute N50/NG50 and auN/auNG

A package for designing compact and comprehensive capture probe sets.

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Provide R access to the NCI Genomic Data Commons portal.

Automatically monitor and log fan counters from social media(Facebook Pages, Twitter, Instagram, YouTube, Google+, OneSignal, Alexa) using APIs to Google Spreadsheet. Very useful for website admins and social media managers.

Fast alignment and preprocessing of chromatin profiles

Code examples of fast and simple k-mer counters for tutorial purposes

Earl Grey: A fully automated TE curation and annotation pipeline

A fast 23andMe genome text file parser, now superseded by arv

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

lit-element components for fast and modular multivariate analysis

annotate a VCF with other VCFs/BEDs/tabixed files

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

A high-performance, Pythonic language for bioinformatics

Predict plasmids from uncorrected long read data

Ultra-fast and memory-efficient (meta-)genome assembler

Java utilities for Bioinformatics

Python library to facilitate genome assembly, annotation, and comparative genomics

Efficient pythonic random access to fasta subsequences

Tools to process and analyze deep sequencing data.

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Official git repository for Biopython (originally converted from CVS)

nim wrapper for htslib for parsing genomics data files

Proof-of-concept seq-to-graph mapper and graph generator

Efficient variant-call data storage and retrieval library using the TileDB storage library.

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Model and predict short DNA sequence features with neural networks

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Flexible genotype query among 30,000+ samples whole-genome

Data intensive science for everyone.

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

Bayesian genotyper for structural variants

GCP Essentials for Bioinformatics Researchers

A fast whole-genome aligner based on de Bruijn graphs

A collection of scripts and notes related to genomics and bioinformatics

Inference of ploidy and heterozygosity structure using whole genome sequencing data

NGLess: NGS with less work

📈 A small, fast chart for time series, lines, areas, ohlc & bars

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

A powerful open source data warehouse system

Scalable genomic data analysis.

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Ten Quick Tips for Deep Learning in Biology

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Intuitive local web frontend for the BLAST bioinformatics tool

Performant Pythonic GenomicRanges

Examples of using deep learning in Bioinformatics

Future Gadget Laboratory

Native iOS/tvOS/macOS SDK

🔥A delightful HTTP/HTTPS networking framework for iOS/macOS/watchOS/tvOS platforms written in Swift.

Easy to deploy Looking Glass

📦 The fastest and simplest packet manipulation lib for Python

Service for making AJAX requests in Ember applications