472 Open source projects that are alternatives of or similar to cell-ontology

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

A Python frontend to (Open Biomedical) Ontologies.

The Ontology for Biomedical Investigations

python library for working with ontologies and ontology associations

Medical action ontology

Tools for working with KGCL

Storing ontologies/vocabularies from the web. Wish anybody can translate some of them.

A lightweight C/C++ library for working with Web Ontology Language (OWL) ontologies

an Ontology SDK

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

Mondo Disease Ontology

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.

OWL and Semantic Web toolkit for Common Lisp, used for construction and reasoning over ontologies and ontology-structured data

The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.

Mobi is a decentralized, federated, and distributed graph data platform for teams and communities to publish and discover data, data models, and analytics that are instantly consumable.

Internationalisation of the HPO content

(subjective) overview of projects which are related both to python and semantic technologies (RDF, OWL, Reasoning, ...)

Modular environmental exposures ontology

ONT-API (OWL-API over Apache Jena)

A community-driven ontology for the representation of environments

SANSA Machine Learning Layer

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

The Knowledge Graph notebook. Apache license.

Home of the Genomic Feature and Variation Ontology (GFVO)

A simple system for specifying OWL class design patterns for OBO-ish ontologies.

BACNET is a Java based platform to develop website for multi-omics analysis

An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)

Faultless AST for Open Biomedical Ontologies in Python.

The Financial Industry Business Ontology (FIBO) defines the sets of things that are of interest in financial business applications and the ways that those things can relate to one another. In this way, FIBO can give meaning to any data (e.g., spreadsheets, relational databases, XML documents) that describe the business of finance.

Repository for the Plant Ontology

A Rails application for biological ontologies

Data transformation framework for LinkML data models

RO is an ontology of relations for use with biological ontologies

Clone of the BodyParts3D/Anatomography 3D model files

Convert OWL to labeled property graph and import into Neo4J

Schema and generated objects for biolink data model and upper ontology

Feature learning over RDF data and OWL ontologies

The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.

Feature Annotation Location Description Ontology

Explore the Plant Trait Ontology on the Planteome site.

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Bystro genetic analysis (annotation, filtering, statistics)

Complex structural variant detection from WGS data

The Go Language Implementation of Ontology Actor Model

Provide R access to the NCI Genomic Data Commons portal.

SPARQL micro-services: A lightweight approach to query Web APIs with SPARQL

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Automatically exported from code.google.com/p/ogms

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Fast hash function for DNA sequences

echt rapid variant annotation and filtering

Fast alignment and preprocessing of chromatin profiles

Document RDFizer for CouchDB

Version 2.1.0 released

Intelligence Task Ontology (ITO)

Ontology for emotions and affective phenomena

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Installer for Thymeflow, a personal knowledge management system.

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

An open-access bioinformatics text