Top 31 obofoundry open source projects

The Ontology for Biomedical Investigations

Schema and generated objects for biolink data model and upper ontology

An ontology of cell types

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)

Biological Collections Ontology

Data transformation framework for LinkML data models

Explore the Plant Trait Ontology on the Planteome site.

Automatically exported from code.google.com/p/ogms

Ontology for emotions and affective phenomena

Internationalisation of the HPO content

RO is an ontology of relations for use with biological ontologies

Modular environmental exposures ontology

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.

information artifact ontology

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

Medical action ontology

Faultless AST for Open Biomedical Ontologies in Python.

python library for working with ontologies and ontology associations

The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.

OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

A Python frontend to (Open Biomedical) Ontologies.

A community-driven ontology for the representation of environments

Repository for the Plant Ontology

Mondo Disease Ontology

Ontology for representing scientific evidence and provenance information

Tools for working with KGCL

A simple system for specifying OWL class design patterns for OBO-ish ontologies.

AgrO describes agronomic practices, techniques, and variables used in agronomic experiments.