94 Open source projects that are alternatives of or similar to civic-server

Web client for CIViC: Clinical Interpretations of Variants in Cancer

Cancer Predisposition Sequencing Reporter (CPSR)

A Slicer extension to provide a GUI around pyradiomics

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Genomics using open source tools, running on GCP or AWS

3D hotspot mutation proximity analysis tool

Aplicativo para o projeto "Anjos do SuperAção"

List of IARC bioinformatics nextflow pipelines

TCGA data acquisition and processing for Project Cognoma

A full-functional backend server of EOS wallet.

xHLA: Fast and accurate HLA typing from short read sequence data

(WIP) best-practices workflow for rare disease

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

An interactive web portal for exploring immuno-oncology data

A Python-Tensorflow neural network for classifying cancer data

SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

A basic framework for pulmonary nodule detection and characterization in CT

A scalable styled-component theming system that fully leverages JavaScript as a language for styles authoring and theming at both local and global levels.

Unleash is the open source feature toggle service.

Harbol is a collection of data structure and miscellaneous libraries, similar in nature to C++'s Boost, STL, and GNOME's GLib

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

Variant types in TypeScript

pathoscore evaluates variant pathogenicity tools and scores.

Simple way to create http server (node js) https://www.npmjs.com/package/test-fake-server

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

Spark VCF data source implementation for Dataframes

Provide R access to the NCI Genomic Data Commons portal.

Single-cell copy number calling and event history reconstruction.

Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.

Text mining cancer biomarkers for the CIVIC database

Recursive Variant: A simple library for Recursive Variant Types

Cancer-dedicated gene set interpretation

A phenotype-based tool for variant prioritization in WES and WGS data

Rare variant test software for next generation sequencing data

Federated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/

Multi-sample somatic variant caller

Gene fusion detection and visualization

Node.js client library for the Civic Secure Identity Platform (SIP).

CNN histopathologic tumor identifier.

A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)

What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.

simple viewer for variant call format using htslib

Simple tagged unions

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

📊Evaluating, filtering, comparing, and visualising VCF

Lollipop-diagram to interactively visualize genetic mutations

A repository for open source civic tools from many countries and organizations

Numerical Encoding for Human Genetic Variants

ACCESS NYC Pattern library and design system documentation for https://access.nyc.gov. Maintained by @NYCOpportunity

Ordo: A minimalist language with row polymorphism

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

VariantRetriever is a minimalist package for feature flagging

🚀 Handy dynamic styles utilities for React Native and React Native Web.

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Fast and accurate gene fusion detection from RNA-Seq data

PEPPER-Margin-DeepVariant

Every traffic violation in the city of Philadelphia issued from 2006 to 2014

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

Multi-task deep learning framework for multi-omics data analysis