1710 Open source projects that are alternatives of or similar to Cookiecutter

UGENE is free open-source cross-platform bioinformatics software

A library to build and execute typed scientific workflows

Robust and efficient workflows using a simple language agnostic approach

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Robust, flexible and resource-efficient pipelines using Go and the commandline

A repository for setting up a RNAseq workflow

Data intensive science for everyone.

An open source platform for managing and analyzing biomedical big data

Thorgate's Django project template - Django, React, Sass, optional Docker and more

🍴 Web applications made easy. Since 2011.

⛏️ ‎ A front-end design toolkit for developing web apps.

Function-oriented Make-like declarative workflows for R

Android Kotlin Starter is a starter project which implements MVVM Pattern.

A collection of best practice cookiecutter templates for all domains and languages with extensive Github support

Enhanced cookiecutter template for Python libraries.

Machine is a workflow/pipeline library for processing data

An R-focused pipeline toolkit for reproducibility and high-performance computing

NLP pipeline software using common workflow language

A library for generating an interactive SVG visualization of CWL workflows

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

A DSL for data-driven computational pipelines

Cuneiform distributed programming language

🔬 BEDOPS: high-performance genomic feature operations

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

cookie cutter template for my r workflow

A simplified pipeline for ctDNA sequencing data analysis

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

A cross-platform command-line tool for executing jobs in parallel

Template React Native project to be used with Cookiecutter

Pythonic starter boilerplate for Flask

Bleeding edge cookiecutter template to create new python packages

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

ATAC-seq peak-calling, QC and differential analysis pipeline

Example workflows for the drake R package

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

contains handy groovy workflow-libs scripts

Analysis pipelines for sequencing data

Snakemake-based workflow for detecting structural variants in WGS data

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Pipeline is a package to build multi-staged concurrent workflows with a centralized logging output.

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

A collection of scripts and notes related to genomics and bioinformatics

Use this Property Manager CLI to automate Akamai property changes and deployments across many environments.

Workflow Description Language - Specification and Implementations

A template for new Python libraries.

A library adding some anti-Pythonic syntatic sugar to Python

Node Task List: Interactive cli to list and run package.json scripts

An integrated modeling solution for BPMN and DMN based on bpmn.io.

A Template Engine for Modern C++

Toolkit for processing sequences in FASTA/Q formats

A Json based Rules Engine with extensive Dynamic expression support

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Interactive Pipe To: The Node.js cli interactive workflow

🔍 A smart launcher. Powered by JavaScript.

A React Material UI template to create rich applications with wizards, charts and ranges