28 Open source projects that are alternatives of or similar to covtobed

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

A DNA Sequence Alignment/Map (SAM) library for Clojure

🚦 Run Picard on BAM files and collate 90 metrics into one file.

Sequence alignment tools

Utilities for analyzing next generation sequencing data.

Multi-sample somatic variant caller

Splice junction analysis and filtering from BAM files

Scalable RNA-seq analysis

Mini tool for arranging HTML elements along with ellipse subset shapes

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Chanjo provides a better way to analyze coverage data in clinical sequencing.

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

Frequently used commands in bioinformatics

Bioinformatics library in Kotlin

Python-based UCSC genome browser snapshot-taker and gallery-maker

利用 github api 实现的一个存储图片/附件的 wordpress 插件

common useful script

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

Genomics data visualization in Python by using matplotlib.

GWAS summary statistics files QC tool

Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data

An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

MView extracts and reformats the results of a sequence database search or multiple alignment.

A modular annotation tool for genomic variants

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

Blender plugin to process biological data and molecular work.