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All Projects → BioJulia → BioAlignments.jl

BioJulia / BioAlignments.jl

Licence: MIT license
Sequence alignment tools

Programming Languages

julia
2034 projects

Labels

bam-filesbioinformaticsbiologyhigh-throughput-sequencingdna-sequencessequence-alignmentsequence-analysisbiojuliasmith-waterman-alignmentsam-files

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BioAlignments.jl

DOI

Latest release MIT license Stable documentation Latest documentation Project Status: Active

Description

BioAlignments.jl provides sequence alignment algorithms and data structures.

Installation

You can install BioAlignments.jl from Julia REPL in pkg mode:

pkg> add BioAlignments

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

Testing

BioAlignments is tested against Julia 1.X on Linux, OS X, and Windows.

Latest build status:

Build Status appveyor codecov Downstream

Contributing

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the contributing files detailed contributor and maintainer guidelines, and code of conduct.

Special Thanks

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.

Backers & Sponsors

Thank you to all our backers and sponsors!

Love our work and community? Become a backer.

backers

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Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on the Julia Slack workspace, or you can try the Bio category of the Julia discourse site.

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].