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Top 7 bam-files open source projects

🚦 Run Picard on BAM files and collate 90 metrics into one file.

✭ 38

shell Makefile picard bam-files bioinformatics quality-control rna-seq

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

BioAlignments.jl

Sequence alignment tools

✭ 49

julia bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis biojulia smith-waterman-alignment sam-files

Utilities for analyzing next generation sequencing data.

✭ 13

shell r visualization wrapper gui bam-files ngs next-generation-sequencing software fasta sfs user-friendly population-genetics admixture genotype-likelihoods ngs-analysis thetas inbreeding-coefficient

Multi-sample somatic variant caller

✭ 45

r Nextflow shell Dockerfile TeX docker bam-files pipeline ngs regression variants somatic-mutations samtools negative-binomial-regression

Splice junction analysis and filtering from BAM files

✭ 29

C++python M4 Makefile shell Singularity bam-files filter portcullis junction splice-junctions

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

✭ 37

C++shell TeX Dockerfile bam-files bioinformatics alignments bioconda bed bioinformatics-tool sequence-coverage

1-7 of 7 bam-files projects