398 Open source projects that are alternatives of or similar to Decontam

The uncompromising Snakemake code formatter

code for reading and processing Allen Institute for Brain Science data

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A powerful open source data warehouse system

A D library for computational biology and bioinformatics

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

JAMP - Just Another Metabarcoding Pipeline

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

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Protein Graph Library

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an implementation of NSGA-II in java

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Curated (meta)list of resources for Biology.

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Tools for working with genomic and high throughput sequencing data.

The START App: R Shiny Transcriptome Analysis Resource Tool

Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag

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A robust model for quantitative comparison of ChIP-Seq data sets.

BioGrakn Knowledge Graph

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MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

Lightweight Iterative Gene set Enrichment in R

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

No description or website provided.

A curated list of bioinformatics bench-marking papers and resources.

Data intensive science for everyone.

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Curated list of bioinformatics formats and publications

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

Bayesian haplotype-based mutation calling

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

A comprehensive library for computational molecular biology

Aggregate results from bioinformatics analyses across many samples into a single report.

Fast multi-line FASTA/Q reader in several programming languages

No description or website provided.

Tools and databases for analyzing HLA and VDJ genes.

📊 Identify cell types and pathways affected by genetic risk loci.

A curated list of awesome Bioinformatics libraries and software.

Post-analysis of immune repertoire sequencing data

Conda recipes for the bioconda channel.

A fast whole-genome aligner based on de Bruijn graphs

LAMBDA – the Local Aligner for Massive Biological DatA

A collection of publications on comparison of high-throughput sequencing technologies.

Efficient pythonic random access to fasta subsequences

A Kotlin DSL and library to create and plot RNA 2D structures