824 Open source projects that are alternatives of or similar to DNAscan

UGENE is free open-source cross-platform bioinformatics software

Data intensive science for everyone.

🍴 Web applications made easy. Since 2011.

Pipeline is a package to build multi-staged concurrent workflows with a centralized logging output.

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Use this Property Manager CLI to automate Akamai property changes and deployments across many environments.

Robust and efficient workflows using a simple language agnostic approach

A simplified pipeline for ctDNA sequencing data analysis

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

Machine is a workflow/pipeline library for processing data

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

Customizable workflows based on snakemake and python for the analysis of NGS data

An automated RNA-seq pipeline using Nextflow

A repository for setting up a RNAseq workflow

NLP pipeline software using common workflow language

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Example workflows for the drake R package

ATAC-seq peak-calling, QC and differential analysis pipeline

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

An R-focused pipeline toolkit for reproducibility and high-performance computing

Utilities for analyzing next generation sequencing data.

Exome/Capture/RNASeq Pipeline Implementation using snakemake

A library to build and execute typed scientific workflows

DEPRECIATED! Please use nf-core/tools instead

Multi-sample somatic variant caller

Function-oriented Make-like declarative workflows for R

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

contains handy groovy workflow-libs scripts

Robust, flexible and resource-efficient pipelines using Go and the commandline

Rare variant test software for next generation sequencing data

List of IARC bioinformatics nextflow pipelines

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Example of how to use ElasticSearch ingest-attachment plugin using JavaScript

GitLab Merger Bot

Bitnami Docker Image for Apache Airflow Scheduler

Python library for dataflow programming.

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

workflow engine activity activiti

📑 My approach to an analysis or product produced with R

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

Configuration as Code, use YAML to write automated workflows that run on Deno, with any Deno modules, Typescript/Javascript codes

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Lightweight workflow engine microservice implement BPMN 2.0

😱 Notify you when CI fails.

🔎 Alfred 3-4 workflow to search for latex symbol commands

The CWL v1.0 user guide

An image build orchestrator for the modern web

One-line installers for implementing Continuous Integration in Drupal 9

Integrate Symfony workflow component in Sonata Admin

SciKIt-learn Pipeline in PAndas

A tool for managing builds of monorepo frontend projects with eg. npm- or yarn workspaces, lerna or similar tools into a standalone application - no other tools needed.

IBIS is a workflow creation-engine that abstracts the Hadoop internals of ingesting RDBMS data.

Automatically scrape data and statistics on Coronavirus to make them easily accessible in CSV format

An example project that predicts risk of credit card default using a Logistic Regression classifier and a 30,000 sample dataset.

Assembling the cause of phenotypes and genotypes from NGS data

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

Use Alfred to browse through your Microsoft OneNote notebooks, section groups and sections and then jump to them instantly.