422 Open source projects that are alternatives of or similar to drop

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

RNA-seq analysis pipeline for detection gene-fusions

RNASeq pipeline

A graphical user interface for distributed data processing of high throughput genomics

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

An automated RNA-seq pipeline using Nextflow

modular pluggable media sorter

MultiBranch Actions Trigger Plugin

A workshop on Unix Programming Principles using tools such as grep, sed, awk, shell programming and regular expressions

⚙️ Schedule notebooks, run them like APIs, expose securely your assets: Jupyter as a viable ⚡️ Production environment

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

kallisto | bustools workflow for pre-processing single-cell RNA-seq data

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Open source VFX pipeline tool

Pack a Go workflow/function as a Unix-style pipeline command

Spline is a tool that is capable of running locally as well as part of well known pipelines like Jenkins (Jenkinsfile), Travis CI (.travis.yml) or similar ones.

An example of how to run a Node.js project in Docker in a Buildkite pipeline

Interactive pipeline filtering in PowerShell (a port of peco).

A single-cell RNAseq pipeline for 10X genomics data

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

Jenkins Pipeline As Yaml Plugin

Differential Gene Correlation Analysis

Erlang Parse Transforms Including Fold (MapReduce) comprehension, Elixir-like Pipeline, and default function arguments

Pipeline: GitHub

Multi-sample somatic variant caller

A library for creating and curating reproducible pipelines for scientific and industrial machine learning

Maya Python API 3.0

This repo holds configuration for infrastructure used across the tektoncd org 🏗️

Pipelines you can compute on

PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

Deploy a secured, clustered, auto-scaling NiFi service in AWS.

GREIN : GEO RNA-seq Experiments Interactive Navigator

A simple Jenkins plugin to promote artifacts.

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

A high performance, high expansion, easy to use framework for AI application. 为AI应用的开发者提供一套统一的高性能、易用的编程框架，快速基于AI全栈服务、开发跨端边云的AI行业应用。

HUAWEI AV Pipeline Kit sample code project, which contains the Java sample code to implement functions like video playback, video super-resolution and media asset management. C++ sample code is contained for calling MediaFilter to use the sound event detection plugin.

RNA mapping pipeline

Saisoku is a Python module that helps you build complex pipelines of batch file/directory transfer/sync jobs.

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

Pipeline for annotating genomes using long read transcriptomics data with pinfish

Powerful pipes for TypeScript, that chain Promise and ADT for you 🚌 -> ⛰️ -> 🚠 -> 🏂 -> 🚀

A PySide2 based file and asset manager for animation and CG productions.

Fast and accurate gene fusion detection from RNA-Seq data

Processing of single cell RNAseq data for the recovery of TCRs in python

Cloud computing is a game changer for developers. What can you do in a couple hundred lines of code?

Event-driven data pipelines

Scripts to import your FeatureCounts output into DEXSeq

A proof of concept RNA-Seq pipeline with Nextflow

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

No description or website provided.

Automatically transfer issues in pipeline by commit message

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Tensorflow object detection with tracking based on the DeepSort algorithm

A high-performance observability data pipeline.

A declarative KubeFlow Management Tool

Extensible stream pipelines with object algebras.

De novo annotation of young retrotransposons

Blazing fast, zero configuration assets bundler for AdonisJS