416 Open source projects that are alternatives of or similar to echolocatoR

Data and analysis for the Splatter paper

Rapid large-scale prokaryote pan genome analysis

3D printed sculpture of a DNA molecule, showing my own genome

Data intensive science for everyone.

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

Aggregate results from bioinformatics analyses across many samples into a single report.

Improving genome bins through the combination of different binning programs

A plotly.js React component from Plotly 📈

Annotated data.

Python and C++ code for reading and writing genomics data.

Mapping-Assisted Targeted-Assembly for Metagenomics

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Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

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📊 Codon usage tables in code-friendly format + Python bindings

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Syntax highlighting for computational biology

Biostar Q&A

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🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

The sources of the openSNP website

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Classify sequencing reads using MinHash.

Workflow Description Language - Specification and Implementations

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Per-base per-nucleotide depth analysis

A cross-platform command-line tool for executing jobs in parallel

Next generation sequencing reads de novo assembler.

The next version of bwa-mem

Single Cell Analysis Pipelines

A modern genome browser built with JavaScript and HTML5.

R package for analyzing single-cell RNA-seq data

Signal-level algorithms for MinION data

A Python platform for Structural Bioinformatics

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

Package for fetching metadata and downloading data from SRA/ENA/GEO

Cutadapt removes adapter sequences from sequencing reads

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

Working with molecular structures in pandas DataFrames

parallel fastq-dump wrapper

Java utilities for Bioinformatics

Find causal cell-types underlying complex trait genetics

Bioinformatics one liners from Ming Tang

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

A comprehensive tutorial about GWAS and PRS

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

Modular and universal bioinformatics

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

The Chemistry Development Kit

Mulled - Automatized Containerized Software Repository

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

A library to build and execute typed scientific workflows

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

My own tools code for NGS data analysis (Next Generation Sequencing)

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Remote protein homology detection suite.