370 Open source projects that are alternatives of or similar to ezancestry

A fast, scalable, and accurate local ancestry method.

Resource of human chromosome schematics & images

A curated list of awesome bioinformatics software.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Proof-of-concept seq-to-graph mapper and graph generator

A WGS de novo assembler based on the FMD-index for large genomes

Highly performant data storage in C++ for importing, querying and transforming variant data with C/C++/Java/Spark bindings. Used in gatk4.

Deep learning infrastructure for bioinformatics

JavaScript VisualizationTools

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

structural variant calling and genotyping with existing tools, but, smoothly.

Fast large scale matrix visualization for the web.

xHLA: Fast and accurate HLA typing from short read sequence data

Intuitive local web frontend for the BLAST bioinformatics tool

Genomic Interactive Visualization Engine

A genome browser that shows long reads and complex variants better

A DNA Sequence Alignment/Map (SAM) library for Clojure

Reads simulator

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Viral genomics analysis pipelines

cython + htslib == fast VCF and BCF processing

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

A curated list of bioinformatics bench-marking papers and resources.

An ultrafast memory-efficient short read aligner

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Bayesian haplotype-based mutation calling

SDK for GPU accelerated genome assembly and analysis

🕝 Time-warped principal components analysis (twPCA)

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦

Find target sites for the miRNAs in genomic sequences

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Using Kaggle Data and Real World Data for Data Science and prediction in Python, R, Excel, Power BI, and Tableau.

A powerful open source data warehouse system

Population assignment analysis using R

GenomeTools genome analysis system.

Interactive web apps created using leafmap and streamlit

Chromosome visualization for the web

A tool for fast and accurate summarizing of variant calling format (VCF) files

Ten Quick Tips for Deep Learning in Biology

Haplotype VCF comparison tools

Rapid large-scale prokaryote pan genome analysis

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

An open-source toolkit for large-scale genomic analysis

Official git repository for Biopython (originally converted from CVS)

Tools to work with variant call format files

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Genomic Data Retrieval with R

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

This repository provides a simple deployment-ready project layout for a Streamlit app. Simply swap out the code in `app.py` for your own and hit deploy!

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

A Java API for high-throughput sequencing data (HTS) formats.

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

nim wrapper for htslib for parsing genomics data files

Performant Pythonic GenomicRanges

MISO: An open-source LIMS for NGS sequencing centres

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

Leetcode using AI

Python package and CLI for whole-genome duplication related analyses