7173 Open source projects that are alternatives of or similar to Gcp For Bioinformatics

An open source platform for managing and analyzing biomedical big data

Deep learning infrastructure for bioinformatics

Real Time Big Data / IoT Machine Learning (Model Training and Inference) with HiveMQ (MQTT), TensorFlow IO and Apache Kafka - no additional data store like S3, HDFS or Spark required

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Rules engine for cloud security, cost optimization, and governance, DSL in yaml for policies to query, filter, and take actions on resources

Python library to facilitate genome assembly, annotation, and comparative genomics

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Python and C++ code for reading and writing genomics data.

Functional F# library to access Firestore database hosted on Google Cloud Platform (GCP) or Firebase.

Efficient variant-call data storage and retrieval library using the TileDB storage library.

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Google Cloud Platform Certification resources.

Ultra-fast and memory-efficient (meta-)genome assembler

A modern genome browser built with JavaScript and HTML5.

A fast and sensitive gapped read aligner

CLI tool to generate terraform files from existing infrastructure (reverse Terraform). Infrastructure to Code

Scripts to download genomes from the NCBI FTP servers

CoCalc: Collaborative Calculation in the Cloud

Workflow Description Language - Specification and Implementations

Official code repository for GATK versions 4 and up

The Go Cloud Development Kit (Go CDK): A library and tools for open cloud development in Go.

Any Airflow project day 1, you can spin up a local desktop Kubernetes Airflow environment AND one in Google Cloud Composer with tested data pipelines(DAGs) 🖥 >> [ 🚀, 🚢 ]

Model and predict short DNA sequence features with neural networks

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

[Video]AWS Certified Machine Learning-Specialty (ML-S) Guide

Best Practices and Style Guides in BEEVA

Google Cloud Storage emulator & testing library.

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

Java utilities for Bioinformatics

Terratag is a CLI tool that enables users of Terraform to automatically create and maintain tags across their entire set of AWS, Azure, and GCP resources

Google's Infrastructure for Everyone Else

The next version of bwa-mem

Android in docker solution with noVNC supported and video recording

Reads from existing Cloud Providers (reverse Terraform) and generates your infrastructure as code on Terraform configuration

Tools to process and analyze deep sequencing data.

Source for Google Click to Deploy solutions listed on Google Cloud Marketplace.

Official code repo for the O'Reilly Book - Practical Deep Learning for Cloud, Mobile & Edge

Data intensive science for everyone.

Scalable genomic data analysis.

Knowledge seeks no man

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

Analysis pipelines for sequencing data

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Pulumi - Developer-First Infrastructure as Code. Your Cloud, Your Language, Your Way 🚀

Hayat is a script for report and analyze Google Cloud Platform resources.

GCP CIS 1.1.0 Benchmark InSpec Profile

A collection of publications on comparison of high-throughput sequencing technologies.

A fast whole-genome aligner based on de Bruijn graphs

An interactive web tool for quality control of DNA sequencing data

Robust and efficient workflows using a simple language agnostic approach

Bayesian genotyper for structural variants

[Book-2019] Pragmatic AI: An Introduction to Cloud-based Machine Learning

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

Genomics Extension for SQLite

A comprehensive tutorial about GWAS and PRS

Efficient pythonic random access to fasta subsequences

UNCURL is a tool for single cell RNA-seq data analysis.