7173 Open source projects that are alternatives of or similar to Gcp For Bioinformatics

[Book-2019] Pragmatic AI: An Introduction to Cloud-based Machine Learning

Zero Infrastructure Password Cracking

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

Simple pure Python SAM parser and objects for working with SAM records

Deploy your apps on any Cloud provider in just a few seconds

Bystro genetic analysis (annotation, filtering, statistics)

A package for designing compact and comprehensive capture probe sets.

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

Cloud cost estimates for Terraform in pull requests💰📉 Love your cloud bill!

Antimicrobial Resistance Identification By Assembly

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

A fast 23andMe genome text file parser, now superseded by arv

A tool to circularize genome assemblies

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

A curated list of bioinformatics bench-marking papers and resources.

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Reads simulator

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

GenomeTools genome analysis system.

Proof-of-concept seq-to-graph mapper and graph generator

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Official git repository for Biopython (originally converted from CVS)

cython + htslib == fast VCF and BCF processing

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

An ultrafast memory-efficient short read aligner

Examples of using deep learning in Bioinformatics

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

Cloud Security Posture Management (CSPM)

This repository walks you through how to Build and Run YOLOv4 Object Detections with Darknet in the Cloud with Google Colab.

This repository contains all codes and materials of the current session. It contains the required code on Natural Language Processing, Artificial intelligence.

A high-performance, Pythonic language for bioinformatics

Scalable genomic data analysis.

Hayat is a script for report and analyze Google Cloud Platform resources.

An interactive web tool for quality control of DNA sequencing data

Bayesian genotyper for structural variants

An active monitoring software to detect failures before your customers do.

Autoencoder model for rare event classification

An introduction to implementing a number of scikit-learn classifiers, along with some data exploration

Implementation of Fast-SCNN using Tensorflow 2.0

Dual Super-Resolution Learning for Semantic Segmentation

Lab files for Azure Machine Learning exercises

PyMC3 codes of Lee and Wagenmakers' Bayesian Cognitive Modeling - A Pratical Course

Official implementation of "Desinging an Encoder for StyleGAN Image Manipulation" https://arxiv.org/abs/2102.02766

Joint Vector Spaces

Python courses for the scientific researcher

import code from IJulia Jupyter notebooks into Julia programs

The purpose of our research is to study reinforcement learning approaches to building a movie recommender system. We formulate the problem of interactive recommendation as a contextual multi-armed bandit.

Deep learning tutorial for PyData

Course Notes for Text Mining - Prof. Peter Organisciak

An RNN implementation to generate music

Docker container for Kafka - Spark Streaming - Cassandra

Python 3

Tutorials on optimization and coding skills

A Machine Learning API with native redis caching and export + import using S3. Analyze entire datasets using an API for building, training, testing, analyzing, extracting, importing, and archiving. This repository can run from a docker container or from the repository.

Udacity capstone project: Kaggle competition on house prices prediction using advanced regression techniques