52 Open source projects that are alternatives of or similar to genesis

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.

Phylogenetic trees in Julia

C++ Data Structures and Algorithms | College Placement Course taught by renowned faculties of Apni Kaksha (Aman Dhattarwal).

An R package for reproducible and automated ADMIXTOOLS analyses

feature-based deep learning for the identification of selective sweeps

Python version of PHLAWD

A course in the theory and practice of phylogenetic inference from DNA sequence data

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

Alignment editor for Mac OS X

Ancestor character reconstruction and visualisation for rooted phylogenetic trees

High-quality circular representations of taxonomic and phylogenetic trees

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

Implementing semantically rich NeXML I/O in R

Lightweight flow-level simulator for inter-node network and service coordination (e.g., in cloud/edge computing or NFV).

🌱 Base Classes and Functions for Phylogenetic Tree Input and Output

Utilities for analyzing next generation sequencing data.

Biological Sequence Substitution Models for Julia

booster.c3bi.pasteur.fr

(Work in progress) The rewritten version of the original PizzaQL 🍕

🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction

A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

Forward-time simulation in Python using fwdpp

This the contains the test examples and validator tool for the ISPD2021 Wafer-Scale Physics Modeling contest.

Ultrafast Sample Placement on Existing Trees

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

FreeCAD workbench about arrays of all sorts and kinds, and local coordinate systems

A tool for the spatial analysis of diversity

Sequential Tree Sampler for online phylogenetics

♥ Fast and Accurate Estimation of Evolutionary Distances

Phylogenetic tree viewer based on D3.js

A Python package for gene-centric taxonomic and functional classification using phylogenetic placement

Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

Pinpoints the mutation favored by selection

A tool for exploring very large trees in the browser

FAVITES (FrAmework for VIral Transmission and Evolution Simulation)

🍿⚛Official React library to use Popper, the positioning library

python Circos

REVOLVER - Repeated Evolution in Cancer

Official git repository for Biopython (originally converted from CVS)

Phylogenetic Likelihood Library

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Version 5 of the CAFE phylogenetics software

deep learning prediction of geographic location from individual genome sequences

🍿⚛Official React library to use Popper, the positioning library

Customizable positioning for tooltips, menus, and any other DOM elements inside of a container

DSA placements preparation guide. Includes DSA Python codes.

Chess variants server