Top 12 population-genetics open source projects

deep learning prediction of geographic location from individual genome sequences

A library for working with phylogenetic and population genetic data.

An R package for reproducible and automated ADMIXTOOLS analyses

feature-based deep learning for the identification of selective sweeps

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format

Utilities for analyzing next generation sequencing data.

🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

Forward-time simulation in Python using fwdpp

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

Pinpoints the mutation favored by selection