413 Open source projects that are alternatives of or similar to gnparser

The Catalogue of Life

Checklist generator

React component for Cytoscape.js network visualisations

Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.

Python package for graph neural networks in chemistry and biology

Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.

Tag your nature photos with iNat taxonomy and observation metadata

Proof-of-concept seq-to-graph mapper and graph generator

A powerful open source data warehouse system

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

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Deep learning infrastructure for bioinformatics

Examples of using deep learning in Bioinformatics

⚠️ ARCHIVED ⚠️ Read Darwin Core Archive files

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A faster lmm for GWAS. Supports GPU backend.

A curated list of resources for learning bioinformatics.

Structural variation caller using third generation sequencing

Intuitive local web frontend for the BLAST bioinformatics tool

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

RAxML Next Generation: faster, easier-to-use and more flexible

JavaScript VisualizationTools

A genome browser that shows long reads and complex variants better

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Toolset for SV simulation, comparison and filtering

Strelka2 germline and somatic small variant caller

Reads simulator

🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

Python client for iNaturalist

Remote protein homology detection suite.

The Ensembl Compara Perl API and SQL schema

An ultrafast memory-efficient short read aligner

La nomenclature des médicaments en Algérie est une collection de données contenant entre autre , le nom de médicament, le numéro d'enregistrement , le dosage , le laboratoire et le pays détenteurs de la décision d'enregistrement , remboursabilité,prix ... Elle est extraite du fichier excel du ministère de santé. Une liste de médicaments en alger…

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

Toolkit for preparing genomes for submission to NCBI

🔬 BEDOPS: high-performance genomic feature operations

A neural network classifier for urban soundscapes

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

A simple command-line tool to download data from Joint Genome Institute databases

code for reading and processing Allen Institute for Brain Science data

Haplotype VCF comparison tools

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A curated list of Cheminformatics libraries and software.

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Map species occurrence data

GenomeTools genome analysis system.

Official git repository for Biopython (originally converted from CVS)

Protein Graph Library

Computational Analysis of Novel Drug Opportunities

Python for Bioinformatics

cython + htslib == fast VCF and BCF processing

Ten Quick Tips for Deep Learning in Biology

OneZoom Tree of Life Explorer

Genome assembly evaluation tool

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

Genomics using open source tools, running on GCP or AWS

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

GBIF Python client