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dropClustVersion 2.1.0 released
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cloud-genomicsIntroduction to Cloud Computing for Genomics
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ntHashFast hash function for DNA sequences
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viralrecallDetection of NCLDV signatures in 'omic data
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mapcompGenetic Map Comparison
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rare-disease-wf(WIP) best-practices workflow for rare disease
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coolpuppyA versatile tool to perform pile-up analysis on Hi-C data in .cool format.
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OntologiesHome of the Genomic Feature and Variation Ontology (GFVO)
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simplesamSimple pure Python SAM parser and objects for working with SAM records
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PHANOTATEPHANOTATE: a tool to annotate phage genomes.
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netSmoothnetSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
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Gwa tutorialA comprehensive tutorial about GWAS and PRS
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mccortexDe novo genome assembly and multisample variant calling
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bystroBystro genetic analysis (annotation, filtering, statistics)
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companionThis repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
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EarlGreyEarl Grey: A fully automated TE curation and annotation pipeline
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arcsvComplex structural variant detection from WGS data
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PostguiA React web application to query and share any PostgreSQL database.
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MTBseq sourceMTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
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MAGMA CelltypingFind causal cell-types underlying complex trait genetics
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wdlRunRElastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
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PyfaidxEfficient pythonic random access to fasta subsequences
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chromapFast alignment and preprocessing of chromatin profiles
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JbrowseA modern genome browser built with JavaScript and HTML5.
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FALDOFeature Annotation Location Description Ontology
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GenomeAnalysisModuleWelcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.
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smartas📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
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catchA package for designing compact and comprehensive capture probe sets.
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echtvarecht rapid variant annotation and filtering
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tiptoftPredict plasmids from uncorrected long read data
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JcviPython library to facilitate genome assembly, annotation, and comparative genomics
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JvarkitJava utilities for Bioinformatics
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switchdeInference of switch-like differential expression along single-cell trajectories
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