414 Open source projects that are alternatives of or similar to gosling.js

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

WebAssembly modules for genomics

ntHash implementation in Rust

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

GA4GH Variation Representation Python Implementation

Monitor ethernet traffic in real time with a 3D backend.

Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

Analyzing the gun lobby’s funding of Congress.

A package for designing activity-informed nucleic acid diagnostics for viruses.

Matplotlib 3.1 cheat sheet.

DriverPower

Bioconductor package for management of multi-assay data

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

Command line utility for manipulating Illumina-generated FastQ files.

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Nextflow basic tutorial for newbie users

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

Predict AMPs in (meta)genomes and peptides

Long-term analysis of emotion, age, and sentiment using Lifeslice and text records.

Big Compute Learning Labs

Collection of scripts for bacterial genomics

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

A library for manipulating bioinformatics sequencing formats in Apache Spark

Biopython Jupyter Notebook tutorial to characterize a small genome

An R framework for phylostratigraphy

simuG: a general-purpose genome simulator

Forward-time simulation in Python using fwdpp

Genome-wide imputation pipeline

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

Explore rearrangements and copy-number amplifications in a cancer genome

find large indels (in the blind spot between GATK/freebayes and SV callers)

Identify phage regions in bacterial genomes for masking purposes

CUT&RUN and CUT&Tag data processing and analysis

Population assignment analysis using R

Bead-based single-cell atac processing

Genomics Workflows on AWS

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

A tool for fast and accurate summarizing of variant calling format (VCF) files

A fast tool for hybrid genome assembly of long and short reads

Code, data, and instructions for mapping the geology of the moon

A ninja python package that unifies the Google Earth Engine ecosystem.

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

Simple, batteries included, components to build beautiful data visualizations

Seven Bridges Genomics aligner/caller debugging and analysis tools

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

A WGS de novo assembler based on the FMD-index for large genomes

📈 A curated list of awesome data visualization libraries and resources.

A DNA Sequence Alignment/Map (SAM) library for Clojure

A tool to plot significant regions of GWAS

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Analysing Capture Seq Count Data

Web application for the Officer's Fishery Information Sharing Hub (O-FISH). The web app allows agencies to gain insights from the aggregated information gathered during a routine vessel inspection (submitted via the web app).

Tools for analyzing 10X Genomics data

R API and htmlwidget for Vitessce

Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/