651 Open source projects that are alternatives of or similar to human_genomics_pipeline

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

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Analysis pipelines for sequencing data

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A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

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This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

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Command line utility for manipulating Illumina-generated FastQ files.

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A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

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Biopython Jupyter Notebook tutorial to characterize a small genome

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Saisoku is a Python module that helps you build complex pipelines of batch file/directory transfer/sync jobs.

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Cloud computing is a game changer for developers. What can you do in a couple hundred lines of code?

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A secure encryption tool for genomic data

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use the noise

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A high-performance observability data pipeline.

High-performance error correction for Illumina resequencing data

Powerful pipes for TypeScript, that chain Promise and ADT for you 🚌 -> ⛰️ -> 🚠 -> 🏂 -> 🚀

Railway oriented programming in Ember

Blazing fast, zero configuration assets bundler for AdonisJS

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Java tools, helper, common utilities. A replacement of guava, apache-commons, hutool

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Efficient ML solution for long-tailed demands.

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

Python package and CLI for whole-genome duplication related analyses

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Population assignment analysis using R

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Jenkins CMake plugin

programs and scripts, mainly python, for analyses related to nucleic or protein sequences