273 Open source projects that are alternatives of or similar to Igv Snapshot Automator

Predict AMPs in (meta)genomes and peptides

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

A tool to plot significant regions of GWAS

Scripts to download genomes from the NCBI FTP servers

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

Inference of switch-like differential expression along single-cell trajectories

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

Analysis pipelines for sequencing data

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Home of the Genomic Feature and Variation Ontology (GFVO)

Multilocus sequence typing by blast using the schemes from PubMLST

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

🐳 Bio-dockers: dockerized bioinformatic tools

Introduction to Cloud Computing for Genomics

Numerical Encoding for Human Genetic Variants

A friendly next-generation interface for Genomic data discovery powered by InterMine

TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

C++ library and cmdline tools for parsing and manipulating VCF files

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Official code repository for GATK versions 4 and up

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Provide R access to the NCI Genomic Data Commons portal.

Python-based UCSC genome browser snapshot-taker and gallery-maker

Python library to facilitate genome assembly, annotation, and comparative genomics

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

Genetic Map Comparison

Improve the quality of a denovo assembly by scaffolding and gap filling

A fast whole-genome aligner based on de Bruijn graphs

Explore rearrangements and copy-number amplifications in a cancer genome

Bystro genetic analysis (annotation, filtering, statistics)

Bead-based single-cell atac processing

A fast and sensitive gapped read aligner

A fast tool for hybrid genome assembly of long and short reads

Version 2.1.0 released

Examples to get started with IBM Functional Genomics Platform

A list of web-based interactive biological data visualizations.

Analysing Capture Seq Count Data

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Java utilities for Bioinformatics

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

(WIP) best-practices workflow for rare disease

ntHash implementation in Rust

Model and predict short DNA sequence features with neural networks

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

Complex structural variant detection from WGS data

GA4GH Variation Representation Python Implementation

A comprehensive tutorial about GWAS and PRS

Fast hash function for DNA sequences

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

Bayesian genotyper for structural variants

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Guided synteny alignment between duplicated genomes (within specified quota constraint)

Python and C++ code for reading and writing genomics data.

Predict plasmids from uncorrected long read data

Resource of human chromosome schematics & images