112 Open source projects that are alternatives of or similar to kraken-biom

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

The intention of this project is to standardize the list of venue types that represent Digital-Out-of-Home (DOOH) advertising screens within a programmatic OpenRTB 2.5 context. The systematization of DOOH venue types will allow for clearer targeting by media buying platforms across a spectrum of available supply-side platforms offering DOOH inve…

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

The Taxonomy for ETL Automation Metadata (TEAM) is a metadata management tool for data warehouse automation. It is part of the ecosystem for data warehouse automation, alongside the Virtual Data Warehouse pattern manager and the generic schema for Data Warehouse Automation.

🐞 Convert NCBI taxonomy dump into lineages

Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

World Register of Marine Species R client

Strain-level abundances estimation in metagenomic samples using variation graphs

Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

The Catalogue of Life

Metagenomics calibration R package

From genomes to phenotypes: Traitar, the microbial trait analyzer

🔔 GunControl • Custom *nix launcher for GunBot

Ruby library for interacting with Bugcrowd's VRT

The Global Virome in One Network

MaAsLin2: Microbiome Multivariate Association with Linear Models

Bonsai: Fast, flexible taxonomic analysis and classification

R interface to the fishbase.org database

gargammel is an ancient DNA simulator

Backend Module ohne Programmierkenntnisse erstellen.

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Python bindings for the TaxonKit library

Buys crypto through keyword detection in new tweets. Executes buy in 1 second and holds for a given time (e.g. Elon tweets 'doge', buys Dogecoin and sells after 5 minutes). Tested on Kraken and Binance exchanges

python port of taxize (taxonomy toolbelt) for R

No description or website provided.

R package for microbiome biomarker discovery

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

No description or website provided.

Fast in-silico normalization algorithm for NGS data

Tag your nature photos with iNat taxonomy and observation metadata

A lightweight and high-performance bioinformatics package in Golang

Contains a list of Popoto.js examples

Repository of all crypto icons, and allows you to download all images of icons of crypto currencies listed on the coinmarketcap site 9129 icons

GraphBin: Refined binning of metagenomic contigs using assembly graphs

A Taxonomy Picker control built with TypeScript for React. Built for use in Office 365 / SharePoint

Remove contaminated contigs from genomes using k-mers and taxonomies.

taxonomy data from Wikipedia/Wikidata/Wikispecies

Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

Ebay NodeJS Wrapper

MM Bot for OpenDEX. Make profits via arbitrage between OpenDEX and a connected CEX account like Binance 🤖

Example plugin for adding an image upload field to taxonomy terms in WordPress

Python library for algorithmic trading cryptocurrencies across multiple exchanges

NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.

Automated entry of TradingView alerts for bot trading tools such as 3Commas, Alertatron, CryptoHopper, etc.

Grav TaxonomyList Plugin

This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.

A base UI class for a term metadata user interface

SKOS-Play allows to print SKOS files in HTML or PDF. It also embeds xls2rdf to generate RDF from Excel.

An interactive radial tree for functional hierarchies and omics data visualization

Arctos is a museum collections management system

micca - MICrobial Community Analysis

Raskoh - easy and object oriented way to interact with WordPress custom post types and taxonomies.

VirNet: A deep attention model for viral reads identification

Rinvex Taggable is a polymorphic Laravel package, for tag management. You can tag any eloquent model with ease, and utilize the awesomeness of Sluggable, and Translatable models out of the box.

A .NET Core program to fetch ticker data from various crypto exchange websites.

Manage vocabularies and taxonomies as separate node-hierarchy.

Meta-Omics Software for Community Analysis

Crypto-TAX Gain/Loss Calculator

Lightweight wrapper for trading cryptocurrencies using Kraken

Work collaboratively in IUCN Red List assessments and manage online biodiversity databases, including a graph-based taxonomy system, species traits and habitats, and species occurrences.