447 Open source projects that are alternatives of or similar to Manorm

A package for designing compact and comprehensive capture probe sets.

Method to optimally select samples for validation and resequencing

NGLess: NGS with less work

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Tools to process and analyze deep sequencing data.

(No maintenance) Detect gene fusion directly from raw fastq files

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Data intensive science for everyone.

A simplified pipeline for ctDNA sequencing data analysis

Project metadata manager for PEPs in Python

Official code repository for GATK versions 4 and up

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Java utilities for Bioinformatics

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

R package for analyzing single-cell RNA-seq data

UGENE is free open-source cross-platform bioinformatics software

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Tools for working with genomic and high throughput sequencing data.

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

C library for high-throughput sequencing data formats

Signal-level algorithms for MinION data

A fast and sensitive gapped read aligner

Scripts to download genomes from the NCBI FTP servers

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Plant image analysis using OpenCV

Biostar Q&A

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

Ultra-fast and memory-efficient (meta-)genome assembler

BWK awk modified for biological data

Cutadapt removes adapter sequences from sequencing reads

A scikit-learn compatible library for graph kernels

Toolkit for processing sequences in FASTA/Q formats

Python and C++ code for reading and writing genomics data.

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Working with molecular structures in pandas DataFrames

Open-source bioinformatics components for Dash

Interactive network visualization in Python and Dash, powered by Cytoscape.js

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Versatile open-source tool for microbiome analysis

Bioinformatics one liners from Ming Tang

Efficient pythonic random access to fasta subsequences

MMseqs2: ultra fast and sensitive search and clustering suite

A comprehensive tutorial about GWAS and PRS

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Robust, flexible and resource-efficient pipelines using Go and the commandline

Aggregate results from bioinformatics analyses across many samples into a single report.

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

Workflow Description Language - Specification and Implementations

Modular and universal bioinformatics

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

d3 library to build circular graphs

The Chemistry Development Kit

Accurate sample inference from amplicon data with single nucleotide resolution

Unix, R and python tools for genomics and data science

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.