123 Open source projects that are alternatives of or similar to melonnpan

MaAsLin2: Microbiome Multivariate Association with Linear Models

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Various functions for analysis of microbial community data

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

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R package for microbiome biomarker discovery

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

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Quantitative features for mass spectrometry data

Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".

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tidy processing of biological sequences in R

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Find unreferenced AWS S3 buckets which have CloudFront CNAME records pointing to them

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

Bioconductor package for management of multi-assay data

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gargammel is an ancient DNA simulator

Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

Documentation for GNPS and related tools as written in mkdocs

AMBER: Assessment of Metagenome BinnERs

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A robust, extensible metagenomics pipeline

The largest public catalogue for Arabic NLP and speech datasets. There are +250 datasets annotated with more than 25 attributes.

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

Strain-level abundances estimation in metagenomic samples using variation graphs

A 2D CAD tool built on React, Three.js, and Immutable

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

A bioinformatics API and web-app to integrate multi-omics datasets & interface with public databases.

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.

No description or website provided.

Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples

Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.

Remove contaminated contigs from genomes using k-mers and taxonomies.

High-quality circular representations of taxonomic and phylogenetic trees

Bonsai: Fast, flexible taxonomic analysis and classification

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

A nodejs tool for packaging and pushing projects to an Octopus Deploy instance.

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Convert between AnnData and SingleCellExperiment

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Strong's Greek Dictionary in XML with real Greek

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