ANTsRAdvanced Normalization Tools in R
Stars: ✭ 101 (+114.89%)
BrainPrepPreprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
Stars: ✭ 107 (+127.66%)
3d PointcloudPapers and Datasets about Point Cloud.
Stars: ✭ 179 (+280.85%)
dictlearnDictionary Learning for image processing
Stars: ✭ 23 (-51.06%)
connectomemapper3Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
Stars: ✭ 45 (-4.26%)
napari-hubDiscover, install, and share napari plugins
Stars: ✭ 44 (-6.38%)
qsiprepPreprocessing and reconstruction of diffusion MRI
Stars: ✭ 94 (+100%)
bg-atlasapiA lightweight python module to interact with atlases for systems neuroscience
Stars: ✭ 54 (+14.89%)
DipyDIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Stars: ✭ 417 (+787.23%)
BRAINSToolsA suite of tools for medical image processing focused on brain analysis
Stars: ✭ 94 (+100%)
brainregAutomated 3D brain registration with support for multiple species and atlases.
Stars: ✭ 73 (+55.32%)
SimpleitkSimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
Stars: ✭ 458 (+874.47%)
SlicergitsvnarchiveMulti-platform, free open source software for visualization and image computing.
Stars: ✭ 896 (+1806.38%)
CilantroA lean C++ library for working with point cloud data
Stars: ✭ 577 (+1127.66%)
PyNetsA Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
Stars: ✭ 114 (+142.55%)
SlicerMulti-platform, free open source software for visualization and image computing.
Stars: ✭ 263 (+459.57%)
DICOMautomatonA multipurpose tool for medical physics.
Stars: ✭ 35 (-25.53%)
combining3DmorphablemodelsProject Page of Combining 3D Morphable Models: A Large scale Face-and-Head Model - [CVPR 2019]
Stars: ✭ 80 (+70.21%)
EMMOElementary Multiperspective Material Ontology (EMMO)
Stars: ✭ 44 (-6.38%)
Non-rigid-ICPNon-rigid iterative closest point, nricp.
Stars: ✭ 66 (+40.43%)
PyllusionA Parametric Framework to Generate Visual Illusions using Python
Stars: ✭ 35 (-25.53%)
ShadowlessA Fast and Open Source Autonomous Perception System.
Stars: ✭ 29 (-38.3%)
monai-deployMONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.
Stars: ✭ 56 (+19.15%)
skrobotskrobot is a Python module for designing, running and tracking Machine Learning experiments / tasks. It is built on top of scikit-learn framework.
Stars: ✭ 22 (-53.19%)
wsi-to-dicom-converterConversion tool/library for converting whole slide images to DICOM
Stars: ✭ 52 (+10.64%)
COVID-CT-MDA COVID-19 CT Scan Dataset Applicable in Machine Learning and Deep Learning
Stars: ✭ 22 (-53.19%)
Bee-ConnectRuby on Rails App. A good example of how to build social networking system with live chat support, blogging,groups etc.
Stars: ✭ 30 (-36.17%)
OCT-ConverterTools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
Stars: ✭ 120 (+155.32%)
aydinAydin — User-friendly, Fast, Self-Supervised Image Denoising for All.
Stars: ✭ 105 (+123.4%)
GIBBONThe Geometry and Image-Based Bioengineering add-On for MATLAB
Stars: ✭ 132 (+180.85%)
ITKPythonPackageA setup script to generate ITK Python Wheels
Stars: ✭ 59 (+25.53%)
rankpruning🧹 Formerly for binary classification with noisy labels. Replaced by cleanlab.
Stars: ✭ 81 (+72.34%)
icra20-hand-object-pose[ICRA 2020] Robust, Occlusion-aware Pose Estimation for Objects Grasped by Adaptive Hands
Stars: ✭ 42 (-10.64%)
pybvA lightweight I/O utility for the BrainVision data format, written in Python.
Stars: ✭ 18 (-61.7%)
BCNetDeep Occlusion-Aware Instance Segmentation with Overlapping BiLayers [CVPR 2021]
Stars: ✭ 434 (+823.4%)
HSI-SDeCNNSource code of "A Single Model CNN for Hyperspectral Image Denoising"
Stars: ✭ 32 (-31.91%)
mowoliMowoli - A Modality Worklist with RESTful HTTP API
Stars: ✭ 17 (-63.83%)
WoWSimpleRegistrationSimple Registration page for TrinityCore/AzerothCore/AshamaneCore/CMangos
Stars: ✭ 121 (+157.45%)
registration✏️ Hackathon registration server
Stars: ✭ 60 (+27.66%)
Barabasi-Albert NetworkBarabási–Albert Network. A Step-by-Step Model with Visualizations created in Python 3.
Stars: ✭ 43 (-8.51%)
superpose3dregister 3D point clouds using rotation, translation, and scale transformations.
Stars: ✭ 34 (-27.66%)
maksMotion Averaging
Stars: ✭ 52 (+10.64%)
GdcmGrassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm
Stars: ✭ 240 (+410.64%)
subpixel-embedding-segmentationPyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)
Stars: ✭ 22 (-53.19%)
peakutilsPeakUtils mirror from bitbucket.
Stars: ✭ 25 (-46.81%)
DicoogleDicoogle - Open Source PACS
Stars: ✭ 237 (+404.26%)
DicompylerExtensible radiation therapy research platform and viewer for DICOM and DICOM RT
Stars: ✭ 195 (+314.89%)
DocuNetCode and dataset for the IJCAI 2021 paper "Document-level Relation Extraction as Semantic Segmentation".
Stars: ✭ 84 (+78.72%)