80 Open source projects that are alternatives of or similar to MolArt

Protein Secondary Structure predictor using Convolutional Neural Networks

PDB parser in Haskell

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De novo protein structure prediction using iteratively predicted structural constraints

VSCode Extension for interactively visualising protein structure data in the editor

3D hotspot mutation proximity analysis tool

Guided Conditional Wasserstein GAN for De Novo Protein Design

A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.

A Python API for the RCSB Protein Data Bank (PDB)

RosettaDesign using PyRosetta

Protein structure comparison tools such as SSAP and SNAP

An open library for the analysis of molecular dynamics trajectories

Syntax highlighting for computational biology

A parser for Microsoft PDB (Program Database) debugging information

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Debug Python code within a Docker container remotely from your terminal using pudb

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Syntax highlighting for computational biology

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Remote vanilla PDB (over TCP sockets).

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gevent tools

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Working with molecular structures in pandas DataFrames

Full-screen console debugger for Python

Protein cavity identification and automatic subpocket decomposition

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

PDBRipper is a utility for extract an information from PDB-files.

A simple tutorial about effectively using pdb

A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

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TeamCity Symbol Server plugin

pdb + Rich library

Remotely and collaboratively debug your Python application via an IRC channel.

Pdb and Vim integration

Pytest PuDB debugger integration

Application to assign secondary structure to proteins

Utility to resolve SQL Server callstacks to their correct symbolic form using just PDBs and without a dump file

Fetch PDB symbols directly from Microsoft's symbol servers

📖 mmCIF support for hybrid/integrative models

Tool for PDB generation from IDA Pro database

Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pytorch. Idea proposed and accepted at ICLR 2021

A dependency-free cross-platform swiss army knife for PDB files.

A tool which allows you to edit source code of any MSVC C++ project live at runtime

🧬 An R package for visualizing molecular data in 3D

Recurrent Geometric Network in Pytorch

Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinformatics Hackathon 2021.

pdb++, a drop-in replacement for pdb (the Python debugger)

A cheatsheet for the Python Debugger (pdb)

ReClassEx

Fully convolutional neural networks for protein residue-residue contact prediction

Rosetta FunFolDes – a general framework for the computational design of functional proteins.

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Single Page Web Application for displaying and studying molecular models

Inference of couplings in proteins and RNAs from sequence variation

An open-source platform for developing protein models beyond AlphaFold.